arabidopsis thaliana google scholar

Linking genotype to phenotype using the Arabidopsis unimutant collection. was partially supported by the European Unions Horizon 2020 Research and Innovation Program under Marie Skodowska-Curie Actions (grant agreement no. and M.B. 2007) and proteinprotein interactions (Trigg et al. Sci. Biotic stress globally downregulates photosynthesis genes. Glutamate triggers long-distance, calcium-based plant defense signaling. Linnaeus renamed the plant, placing it in the genus Arabis and assigning a species name in honor of Thal, hence Arabis thaliana (Linnaeus 1753). Llave C., Xie Z., Kasschau K. D., Carrington J. C., 2002b. 2008). Thus male gametophyte development is reminiscent of animal spermatogenesis, wherein spermatogonia develop within Sertoli cells, and sperm mitochondria usually degenerate after fertilization (Griswold 2016). Dharmasiri N., Dharmasiri S., Estelle M., 2005. 2003), allowing for reverse-genetics research (e.g., Figure 7). Heterotrimeric G proteins serve as a converging point in plant defense signaling activated by multiple receptor-like kinases. Broad-spectrum suppression of innate immunity is required for colonization of Arabidopsis roots by the fungus. 2004). Besumbes O., Sauret-Geto S., Phillips M. A., Imperial S., Rodrguez-Concepcin M., et al., 2004. Fan, J., Crooks, C. & Lamb, C. High-throughput quantitative luminescence assay of the growth in planta of Pseudomonas syringae chromosomally tagged with Photorhabdus luminescens luxCDABE. Sitzungs-bericht der gesellschaft naturforschender freunde zu Berlin. 2002). Welcome to the tidyverse. Likewise, the F-box CORONATINE-INSENSITIVE1 (COI1) protein, also discovered through Arabidopsis forward genetics, is a receptor for the jasmonate phytohormone (Sheard et al. Lex, A., Gehlenborg, N., Strobelt, H., Vuillemot, R. & Pfister, H. Upset: visualization of intersecting sets. Schwacke R., Schneider A., Van Der Graaff E., Fischer K., Catoni E., et al., 2003. obtained the funding. The authors declare no competing interests. Nelson D. C., Riseborough J.-A., Flematti G. R., Stevens J., Ghisalberti E. L., et al., 2009. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Timofeev-Resovskii N. V., Ginter E. K., Glotov N. V., Ivanov V. I., 1971. An endogenous peptide signal in Arabidopsis activates components of the innate immune response. Science 361, 11121115 (2018). Zheng N., Schulman B. Plant Microbe Interact. (A) Stomata, the two-celled pores that regulate gas exchange, are distributed among interlocked pavement cells in wild type. ), the National Institutes of Health (R01GM079177 to B.B. The RNA-seq datasets generated and analysed in the current study have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-9694. Before Singh R., Singh S., Parihar P., Singh V. P., Prasad S. M., 2015. Ethylene signals modulate the survival of Arabidopsis leaf explants Although Arabidopsis does not produce wood, a related secondary growth process is present (Dolan and Roberts 1995) and can be stimulated by certain manipulations (Zhao et al. Mol. The ones marked * may be different from the article in the profile. For example, Beta vulgaris (sugar beet) produces betalains, vivid antioxidants (Brockington et al. Many basic discoveries made using this plant have spawned new research areas, even beyond the verdant fields of plant biology. Sugiyama N., Nakagami H., Mochida K., Daudi A., Tomita M., et al., 2008. d, WRKY40 is strongly expressed (note y axis) and strongly pattern-induced. Lorek, J., Griebel, T., Jones, A. M., Kuhn, H. & Panstruga, R. The role of Arabidopsis heterotrimeric G-protein subunits in MLO2 function and MAMP-triggered immunity. Arabidopsis thaliana is the only Brassicaceae studied in this work whose ABS regulators show an enrichment in the GO term "regulation of anthocyanin metabolism" (fig. 2000); reduced GL3 expression results in few trichomes, whereas overexpression increases trichome density (Figure 4). The color of each dot indicates the most negative log2(FC) observed in this study. 55, 109137 (2017). Proc. Trichomes are single-cell extensions from the surfaces of leaves and stems (Figure 3). 75. Media may be supplemented with sucrose to promote even germination and to allow the early development of certain metabolic mutants (Pinfield-Wells et al. Unlike animal model organisms for which the preservation of lineages often involves uninterrupted ongoing work, Arabidopsis seeds can survive for years without attention at room temperature and even longer with refrigeration. Nature 428, 764767 (2004). 2005). Nat. 2011), which complicates genetic research. 2002; Rapp et al. Bio-protocol 10, e3799 (2020). BMC Biology R: a language and environment for statistical computing (R Foundation for Statistical Computing, 2020). 1993; Clough and Bent 1998; Alonso et al. Wickham, H. et al. Greuter W., Burdet H. M., Chaloner W. G., Demoulin V., Grolle R., et al., 1988. 2c. Proc. Sign up for the Nature Briefing newsletter what matters in science, free to your inbox daily. Finally, C and E activity produces the innermost carpel (female) reproductive structures (Krizek and Fletcher 2005). Box plots center on the median, with box extending to the first and third quartile, and whiskers extending to the lesser value of the furthest point or 1.5x the inter-quartile range. Furthermore, although Arabidopsis also does not associate with the endosymbiotic bacteria that fix nitrogen, Arabidopsis is useful for studying root colonization by the mutualistic fungus Piriformospora indica (Jacobs et al. Bates, G. W. et al. For more carefully controlled experiments, such as those using specific additives or investigating aspects of root development, seedlings can be germinated and grown on sterile media in Petri dishes. In this example, the numeral one denotes the first mutant isolated in the transport inhibitor response mutant screen. Glob. Kohlen W., Charnikhova T., Liu Q., Bours R., Domagalska M. A., et al., 2011. Cell 165, 12801292 (2016). The timeline highlights selected events in Arabidopsis history (Thal 1588; Braun 1873; Laibach 1907; Titova 1935; Reinholz 1947; Langridge 1955; McKelvie 1962; Rdei 1975; Somerville and Ogren 1979; Meyerowitz and Pruitt 1985; Lloyd et al. Seed banks and molecular maps: unlocking genetic potential from the wild. Shown are mean corrected YFP/CFP ratio within 25 min (a, b), 1 min, or 5 min (c) post-treatment (timepoint 0) +/1 standard error of the mean. EKF Chan, HC Rowe, JA Corwin, B Joseph . The potential fusion protein does not encode any transmembrane domains. Phillips A. R., Suttangkakul A., Vierstra R. D., 2008. 2017) for conducting overexpression, localization, and interaction studies. Ruegger M., Dewey E., Gray W. M., Hobbie L., Turner J., et al., 1998. Blackwell R. D., Murray A. J., Lea P. J., Kendall A. C., Hall N. P., et al., 1988. 2010) and CRISPR/Cas9-based gene editing tools (Jiang et al. A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis. 2021, 22, 599. Analysis of the genome sequence of the flowering plant. Flora Londinensis: Or Plates and Descriptions of Such Plants as Grow Wild in the Environs of London, Prodromus systematis naturalis regni vegetabilis. Article ), the National Science Foundation (MCB-1516966 to B.B. Mahwish Ejaz https: . and M.B. limma powers differential expression analyses for RNA-sequencing and microarray studies. Received 2017 Sep 18; Accepted 2018 Jan 23. Nat. Mol. Plant J. B., Assenberg R., et al., 2016. Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Proc. Sucrose rescues seedling establishment but not germination of Arabidopsis mutants disrupted in peroxisomal fatty acid catabolism. Plant Cell 22, 508522 (2010). 2005; Kepinski and Leyser 2005). & Thomashow, M. F. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Forward-genetic screens are routinely initiated by mutagenizing seeds with ethyl methanesulfonate (Koornneef and Van Der Veen 1980), irradiation (Reinholz 1947), fast-neutron bombardment (Timofeev-Resovskii et al. Chang C., Kwok S. F., Bleecker A. Even mutants that require supplemented growth medium for germination can often survive transfer to soil once established (Zolman et al. This is a preview of subscription content, access via your institution. ARGONAUTE, a key component of the RNA-Induced Silencing Complex (RISC) through which miRNAs act, was first discovered in Arabidopsis (Bohmert et al. Genome Biol. Historically, human interactions with plants were often focused on crop yields. Mechanism of auxin perception by the TIR1 ubiquitin ligase. (E) In the absence of E-gene activity, no floral structures form, and the numerous whorls resemble leaves (le), including the presence of leaf hairs (trichomes) decorating the surfaces. Kilian, J. et al. 2000 Dec 14; 408 (6814):796-815. Plastids, including chloroplasts and a variety of other specialized versions, are cyanobacteria-like organelles that conduct photosynthesis but also impart fruit colors, assist in gravity detection, and play key roles in plant metabolism and development. Alexa, A. Arabidopsis chemically deters herbivores in part by producing pungent glucosinolates (Hogge et al. A comparative study of the Arabidopsis thaliana guard-cell transcriptome and its modulation by sucrose. Two types of media are commonly used: (MS) medium (Murashige and Skoog 1962) and plant nutrient (PN) medium (Haughn and Somerville 1986). Embryonentest zum Nachweis Rezessiver Letalfaktoren bei. Trigg S. A., Garza R. M., Macwilliams A., Nery J. R., Bartlett A., et al., 2017. meinke, d.w., embryo-lethal mutants of arabidopsis-thaliana - analysis of mutants with a wide-range of lethal phases, theoretical and applied genetics 69: 543 (1985). Bilgin, D. D. et al. 6, 366 (2015). However, seeds on the soil surface are susceptible to desiccation, and plastic domes or tented plastic wrap can be used to reduce evaporation for the first week or longer. Federal government websites often end in .gov or .mil. 2013), many plants are now amenable to analysis that was once only feasible in Arabidopsis. Nature Plants 2013; Hohmann et al. Du, L. et al. Murashige and Skoog solution should not be used as nutrient solution in deep water culture. 5 Pattern-triggered transcriptional repression acts in time-resolved waves. Kiss J. 279, 1926 (2019). Likewise, there are few ethical and safety concerns with experimental design, treatment, and handling of Arabidopsis. 2003), subcellular localization (Hooper et al. 96, 487502 (2018). Gene expression in developing fibres of Upland cotton (. For example, components of the autophagy pathway involved in degrading cellular aggregates and organelles were first identified in yeast (Tsukada and Ohsumi 1993). AFLP analysis of a collection of tetraploid wheats indicates the origin of emmer and hard wheat domestication in southeast Turkey. 2010). Arabidopsis thaliana - an overview | ScienceDirect Topics To determine a putative correlation between UV-B regime and chromocenter shape, we choose four different A. thaliana natural variants originating from representative ranges of natural UV-B regimes [] (Fig. zkan H., Brandolini A., Schfer-Pregl R., Salamini F., 2002. Bot. National Library of Medicine Science 364, 178181 (2019). Instead, Arabidopsis has become the most widely studied plant in modern biology despite its absence from the dinner table. Both the F-box and the target protein participate in hormone binding and can therefore be considered coreceptors. Other English names for the plant, including Thale cress and mouse-ear cress, are rarely used by researchers. Thank you for visiting nature.com. 182, 15821596 (2020). d, Stomatal aperture of WT, glr2.7/2.8/2.9, or flg22-hyporesponsive bak1-5 plants treated with water, 5 M flg22, or 10 M ABA. 440, 355365 (2011). Google Scholar. Reinholz E., 1947. The dpd1 mutant, defective in an exonuclease, has persistent organellar DNA (plastidial and mitochondrial) through the tricellular stage of development. Reinhart B. J., Weinstein E. G., Rhoades M. W., Bartel B., Bartel D. P., 2002. 2011). Arabidopsis can be transformed using a facile dip of plants that have begun to flower into Agrobacterium tumefaciens culture (Clough and Bent 1998). For example, hormones often function similarly across plant species, and the receptors and signaling pathways of almost all plant hormones have been elucidated in Arabidopsis (Provart et al. Sci. Schneeberger K., Ossowski S., Lanz C., Juul T., Petersen A. H., et al., 2009. Plant Cell Environ. Statistical tests were performed in R, two-way ANOVA blocking by experiment. Internet Explorer). USA 115, 64946499 (2018). Huffaker, A., Pearce, G. & Ryan, C. A. Although most of the typical eukaryotic organelles are present, there are some special structures, and familiar organelles sometimes take on specialized functions in plant cells. Hogge L. R., Reed D. W., Underhill E. W., Haughn G. W., 1988. 13, eaba1453 (2020). Arbuscular mycorrhizal fungi are crucial for nutrient and water absorption and colonize 80% of land plants (Wang and Qiu 2006). Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Wetenschap. Nitrogen | Free Full-Text | Isoenzymatic Pattern of Hydrogen - MDPI Hamamura Y., Saito C., Awai C., Kurihara D., Miyawaki A., et al., 2011. Asterisks indicate the date when the genome sequence was first published for each model. (2015). AGO1 defines a novel locus of Arabidopsis controlling leaf development. Whereas Wisconsin fast plants have larger structures and fast life cycles (Williams 1997), the wealth of bioinformatics resources, mutants, and published studies that Arabidopsis brings to the classroom is unrivaled. PubMedGoogle Scholar. AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol. 94, 10641082 (2018). Much fundamental knowledge of plastid function emerged from Arabidopsis (Martin et al. Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. Most tools available in nonplant model systems are available in Arabidopsis. 16, 426433 (2015). Bioinformatics 30, 21142120 (2014). Arabidopsis offers insight into a host of other plant developmental and cellular processes. Induction and analysis of gibberellin sensitive mutants in. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. We collated over 27 terabases of RNA-sequencing data on Arabidopsis thaliana from over 300 peer-reviewed studies and 200 treatment conditions to investigate this hypothesis. Liu, J. et al. Some authors consider Arabidopsis to be a common name, printing the nonitalicized word with or without capitalization. Nature 500, 422426 (2013). In particular, the perception of microbial or plant-derived molecular patterns by cell-surface-localized pattern recognition receptors (PRRs) induces pattern-triggered immunity, which includes massive transcriptional reprogramming1. Sci. 4, 1686 (2019). 2006) and yeast two-hybrid vectors (Trigg et al. Plant Physiol. Schellmann S., Schnittger A., Kirik V., Wada T., Okada K., et al., 2002. The .gov means its official. 4 Pattern-responsive genes tend to be repressed by single patterns, though there does exist a core set of 93 genes repressed by all tested patterns. Thals descriptions included a plant he named Pilosella siliquata (Thal 1588). Selection for greater yield and seedlessness has, in many cases, involved polyploidy (zkan et al. [Google Scholar] Vergunst AC, Jansen LE, Fransz PF, de Jong JH, Hooykaas PJ. Schmid M., Davison T. S., Henz S. R., Pape U. J., Demar M., et al., 2005. The genome is small (132 Mbp) for a plant, with 38,000 loci, including >20,000 protein-coding genes dispersed among five nuclear chromosomes (Arabidopsis Genome Initiative 2000; Cheng et al. Only later was thaliana migrated into the genus Arabidopsis (Holl and Heynhold 1842). 11, 165 (2010). Lighted plant growth chambers allow precise control of day length and circulate air to maintain stable, user-defined temperatures while limiting condensation in closed Petri dishes. and transmitted securely. Genetics. Leggate, J., Allain, R., Isaac, L. & Blais, B. W. Microplate fluorescence assay for the quantification of double stranded DNA using SYBR Green I dye. 2015; van Wijk and Kessler 2017). Perrier X., De Langhe E., Donohue M., Lentfer C., Vrydaghs L., et al., 2011. CAS No genes were significantly repressed at five minutes post-treatment. How can plants tell which way is up? The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis. Comparative functional genomic analysis of. 28, 15871594 (2006). 2004) well before such predictions were feasible in metazoans.
Football Coach Autobiography, Articles A